Thought experiment regarding the endgame

[GhylTarvoke]

Spoilers, obviously!

What if the copying process (e.g. at Phi) required the subject to be asleep beforehand? Imagine the following:

You slowly regain consciousness. You remember that your name is Simon. You remember your journey through PATHOS-II, culminating in your arrival at Phi. You remember plugging in the Omnitool, sitting in the pilot seat, and loading the missile. The last thing you remember is Catherine putting you to sleep before the scan.

You're not fully awake yet. You currently see, hear, and feel nothing - but in a few moments, your bodily awareness will return. Now, here's my question: are you on the ARK, or are you still at Phi?